Immunome Research

Factors important in evolutionary shaping of immunoglobulin gene loci
Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 "..."
Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis
DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells
NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
Concept and application of a computational vaccinology workflow
Models of RNA virus evolution and their roles in vaccine design
State of the art and challenges in sequence based T-cell epitope prediction
Applying bioinformatics for antibody epitope prediction using affinity-selected mimotopes – relevance for vaccine design
T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges
Recent advances in B-cell epitope prediction methods
Computer aided selection of candidate vaccine antigens
An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics
An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches
Identification of conformational B-cell Epitopes in an antigen from its primary sequence
TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence
Bioinformatics analysis of Brucellavaccines and vaccine targets using VIOLIN
Clustering-based identification of clonally-related immunoglobulin gene sequence sets
Model refinement through high-performance computing: an agent-based HIV example
pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes
Stacking and energetic contribution of aromatic islands at the binding interface of antibody proteins

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